Computer Science at Indiana State University - Recent changes [en]

Jeff Kinne

Jkinne — Thu, 30 Apr 2026 18:43:18 GMT

Publication list

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	===Publication list===		===Publication list===

			Tally, D.G.; Bombina, P.; Reed, J.; Kinne, J.; Abruzzo, L.V.; Coombes, K.R.; Abrams, Z.B. Clustering Digestive Tract Tumors Using Transcriptomic and Mutation Data. ''Cancers'' '''2026''', 18, 1427. https://doi.org/10.3390/cancers18091427

	Isaiah Bartlett, Jeff Kinne, Grace Martin, Kevin Coombes, and Kristopher R. Schwab. A high-throughput gene expression analysis software tool for developmental time series and gene signature analysis of human cardiomyocyte differentiation. F1000 Research, 2024. Under review. [https://f1000research.com/articles/13-1097 full text], [https://gitlab.com/jkinne/devgea software/code]		Isaiah Bartlett, Jeff Kinne, Grace Martin, Kevin Coombes, and Kristopher R. Schwab. A high-throughput gene expression analysis software tool for developmental time series and gene signature analysis of human cardiomyocyte differentiation. F1000 Research, 2024. Under review. [https://f1000research.com/articles/13-1097 full text], [https://gitlab.com/jkinne/devgea software/code]

CS accounts

Jkinne — Thu, 30 Apr 2026 18:32:53 GMT

Local Accounts

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	==Local Accounts==		==Local Accounts==
	Some users will have accounts on the CS server that are not tied to their ISU portal accounts. For example, CS faculty have local accounts, and a number of users of the server prior to 2025 have local accounts. These are accounts with username and password that were created just on the server (the ability to login to the server with ISU portal credentials was added in 2025). Any new instructor teaching a CS course can ask for a local account if you do not have one already - write to root@cs.indstate.edu.		Some users will have accounts on the CS server that are not tied to their ISU portal accounts. For example, CS faculty have local accounts, and a number of users of the server prior to 2025 have local accounts. These are accounts with username and password that were created just on the server (the ability to login to the server with ISU portal credentials was added in 2025). Any new instructor teaching a CS course can ask for a local account if you do not have one already - write to root@cs.indstate.edu.

			==SSH Key==
			You can setup an SSH key to login to the system. You will first need to login to the system normally. Once you are logged in, you can run the following commands.
			<pre>
			mkdir ~/.ssh # in case it does not exist yet
			chmod 700 ~/.ssh # make sure this directory is not accessible to other users
			ssh-keygen # create keys for logging in
			</pre>
			You will then transfer the private key file (the one that does not end in .pub) to your local computer in the location for ssh keys.

	=Student Use and Course Account=		=Student Use and Course Account=
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	An instructor can collect an assignment by running the script <code>hw_collect.py</code>. For the above example, the instructor would run: <code>hw_collect.py cs151 h7</code>. This will go into each student in the course's <code>cs151</code> directory and copy their h7 directory into <code>/home/cs151/private/submissions/h7/</code>. There will be a new directory in that submissions directory for the date and time the submissions were collected. For example, if the user jdoe12345@isuad.indstate.edu is in the cs151 course, then the contents of <code>/home/jdoe12345@isuad.indstate.edu/h7/</code> will be copied into the submission directory (inside of <code>/home/cs151/private/submissions/h7/</code>). The directory <code>/home/cs151/private/submissions/h7/</code> will have a symbolic link <code>latest</code> that is a pointer to the latest submission.		An instructor can collect an assignment by running the script <code>hw_collect.py</code>. For the above example, the instructor would run: <code>hw_collect.py cs151 h7</code>. This will go into each student in the course's <code>cs151</code> directory and copy their h7 directory into <code>/home/cs151/private/submissions/h7/</code>. There will be a new directory in that submissions directory for the date and time the submissions were collected. For example, if the user jdoe12345@isuad.indstate.edu is in the cs151 course, then the contents of <code>/home/jdoe12345@isuad.indstate.edu/h7/</code> will be copied into the submission directory (inside of <code>/home/cs151/private/submissions/h7/</code>). The directory <code>/home/cs151/private/submissions/h7/</code> will have a symbolic link <code>latest</code> that is a pointer to the latest submission.

			There is a system in place that can be used for auto-checking the output of student programs. The instructor creates a file <code>.tests.json</code> inside of the assignment directory that has the test cases. The instructor will also need to create a correct working version of each program that can be run to get the "correct" results. The students will use the <code>hw_check.py</code> command to check their output. The instructor can also use the same comment to check student submissions. You can get more details about how this works by logging into the system and running: <code>hw_check.py --help</code>.

	=Spring 2026=		=Spring 2026=

Science Bowl

Jkinne — Thu, 23 Apr 2026 22:15:41 GMT

Historical Results

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	* 2025: '''Creekside Middle School''' (top 24 at nationals), Sycamore, Meyzeek, Creekside, Sycamore, Woodrow Wilson		* 2025: '''Creekside Middle School''' (top 24 at nationals), Sycamore, Meyzeek, Creekside, Sycamore, Woodrow Wilson
	* 2024: '''Sycamore School''' (tied for 7th at nationals), Sycamore, Creekside, Clague, Mason, Creekside		* 2024: '''Sycamore School''' (tied for 7th at nationals), Sycamore, Creekside, Clague, Mason, Creekside
	* 2023: '''Sycamore School''' (tied for 5th at nationals, Clague, Sycamore, Creekside, Woodrow Wilson, Creekside		* 2023: '''Sycamore School''' (tied for 5th at nationals), Clague, Sycamore, Creekside, Woodrow Wilson, Creekside
	* 2022: '''Sycamore School''' (top 9 at nationals), Creekside, Clague, Creekside, Cranbrook		* 2022: '''Sycamore School''' (top 9 at nationals), Creekside, Clague, Creekside, Cranbrook
	* 2021: '''Sycamore School''', Mason, Creekside, Clague, Creekside		* 2021: '''Sycamore School''', Mason, Creekside, Clague, Creekside